Index

A

add_contacts_from_edgelist() (in module synthpops.school_modules) add_contacts_from_group() (in module synthpops.school_modules) add_contacts_from_groups() (in module synthpops.school_modules) add_random_contacts_from_graph() (in module synthpops.school_modules) add_school_edges() (in module synthpops.school_modules)

agent-based model assign_additional_staff_to_schools() (in module synthpops.contact_networks) assign_rest_of_workers() (in module synthpops.contact_networks) assign_teachers_to_schools() (in module synthpops.contact_networks) assign_uids_by_homes() (in module synthpops.contact_networks)

C

calc_death() (in module synthpops.sampling) calculate_contact_matrix() (in module synthpops.plot_tools) check_all_residents_are_connected_to_staff() (in module synthpops.long_term_care_facilities) choose_contacts() (in module synthpops.contacts) combine_matrices() (in module synthpops.base)

contact layers create_reduced_contacts_with_group_types() (in module synthpops.contacts) custom_generate_all_households() (in module synthpops.long_term_care_facilities) custom_generate_larger_households() (in module synthpops.long_term_care_facilities) custom_resample_age() (in module synthpops.long_term_care_facilities)

E

edge

G

generate_all_households() (in module synthpops.contact_networks) generate_clustered_classes_by_grade_in_school() (in module synthpops.school_modules) generate_edges_between_teachers() (in module synthpops.school_modules) generate_edges_for_teachers_in_clustered_classes() (in module synthpops.school_modules) generate_edges_for_teachers_in_random_classes() (in module synthpops.school_modules) generate_household_head_age_by_size() (in module synthpops.contact_networks) generate_household_sizes() (in module synthpops.contact_networks) generate_household_sizes_from_fixed_pop_size() (in module synthpops.contact_networks) generate_larger_households() (in module synthpops.contact_networks) generate_living_alone() (in module synthpops.contact_networks) generate_microstructure_with_facilities() (in module synthpops.long_term_care_facilities) generate_random_classes_by_grade_in_school() (in module synthpops.school_modules) generate_random_contacts_across_school() (in module synthpops.school_modules) generate_random_contacts_for_additional_school_members() (in module synthpops.school_modules) generate_school_sizes() (in module synthpops.contact_networks) generate_synthetic_population() (in module synthpops.contact_networks) generate_synthetic_population_with_workplace_industries() (in module synthpops.contact_networks_industries) generate_usa_workplace_sizes() (in module synthpops.contact_networks) generate_workplace_sizes() (in module synthpops.contact_networks) get_age_bracket_distr_path() (in module synthpops.data_distributions) get_age_brackets_from_df() (in module synthpops.data_distributions) get_age_by_brackets_dic() (in module synthpops.base) get_age_n() (in module synthpops.sampling) get_age_sex() (in module synthpops.sampling) get_age_sex_n() (in module synthpops.sampling) get_aggregate_age_dict_conversion() (in module synthpops.base) get_aggregate_ages() (in module synthpops.base) get_aggregate_matrix() (in module synthpops.base) get_asymmetric_matrix() (in module synthpops.base) get_census_age_brackets() (in module synthpops.data_distributions) get_census_age_brackets_path() (in module synthpops.data_distributions) get_contact_matrix() (in module synthpops.data_distributions) get_contact_matrix_dic() (in module synthpops.data_distributions) get_default_school_size_distr_brackets() (in module synthpops.school_modules) get_default_school_size_distr_by_type() (in module synthpops.school_modules) get_default_school_type_age_ranges() (in module synthpops.school_modules) get_default_school_types_by_age() (in module synthpops.school_modules) get_default_school_types_by_age_single() (in module synthpops.school_modules) get_employment_rates() (in module synthpops.data_distributions) get_employment_rates_path() (in module synthpops.data_distributions) get_establishment_size_brackets_df() (in module synthpops.contact_networks_industries) get_establishments_by_industries_df() (in module synthpops.contact_networks_industries) get_gender_fraction_by_age_path() (in module synthpops.data_distributions) get_head_age_brackets() (in module synthpops.data_distributions) get_head_age_brackets_path() (in module synthpops.data_distributions) get_head_age_by_size_distr() (in module synthpops.data_distributions) get_household_head_age_by_size_df() (in module synthpops.data_distributions) get_household_head_age_by_size_path() (in module synthpops.data_distributions) get_household_size_distr() (in module synthpops.data_distributions) get_household_size_distr_path() (in module synthpops.data_distributions)

get_ids_by_age_dic() (in module synthpops.base) get_industry_code() (in module synthpops.contact_networks_industries) get_industry_title() (in module synthpops.contact_networks_industries) get_industry_type_df() (in module synthpops.contact_networks_industries) get_main_industry_code() (in module synthpops.contact_networks_industries) get_main_industry_title() (in module synthpops.contact_networks_industries) get_mortality_rates_by_age() (in module synthpops.sampling) get_mortality_rates_by_age_bracket() (in module synthpops.sampling) get_mortality_rates_filepath() (in module synthpops.sampling) get_n_contact_ids_by_age() (in module synthpops.sampling) get_school_enrollment_rates() (in module synthpops.data_distributions) get_school_enrollment_rates_path() (in module synthpops.data_distributions) get_school_size_brackets() (in module synthpops.data_distributions) get_school_size_brackets_path() (in module synthpops.data_distributions) get_school_size_distr_by_brackets() (in module synthpops.data_distributions) get_school_size_distr_by_brackets_path() (in module synthpops.data_distributions) get_school_sizes_df() (in module synthpops.data_distributions) get_school_sizes_path() (in module synthpops.data_distributions) get_seattle_age_sex() (in module synthpops.sampling) get_seattle_age_sex_n() (in module synthpops.sampling) get_simplified_industry_code() (in module synthpops.contact_networks_industries) get_simplified_industry_title() (in module synthpops.contact_networks_industries) get_simplified_industry_type_df() (in module synthpops.contact_networks_industries) get_state_postal_code() (in module synthpops.data_distributions) get_symmetric_community_matrix() (in module synthpops.base) get_totalpopsize_from_household_sizes() (in module synthpops.contact_networks) get_uids_by_age_dic() (in module synthpops.base) get_uids_in_school() (in module synthpops.contact_networks) get_uids_potential_workers() (in module synthpops.contact_networks) get_usa_age_n() (in module synthpops.sampling) get_usa_age_sex() (in module synthpops.sampling) get_usa_age_sex_n() (in module synthpops.sampling) get_usa_long_term_care_facility_data() (in module synthpops.data_distributions) get_usa_long_term_care_facility_path() (in module synthpops.data_distributions) get_usa_long_term_care_facility_resident_to_staff_ratios_brackets() (in module synthpops.data_distributions) get_usa_long_term_care_facility_resident_to_staff_ratios_brackets_path() (in module synthpops.data_distributions) get_usa_long_term_care_facility_resident_to_staff_ratios_distr() (in module synthpops.data_distributions) get_usa_long_term_care_facility_resident_to_staff_ratios_path() (in module synthpops.data_distributions) get_usa_long_term_care_facility_residents_distr() (in module synthpops.data_distributions) get_usa_long_term_care_facility_residents_distr_brackets() (in module synthpops.data_distributions) get_usa_long_term_care_facility_residents_distr_brackets_path() (in module synthpops.data_distributions) get_usa_long_term_care_facility_residents_path() (in module synthpops.data_distributions) get_usa_school_enrollment_rates_df() (in module synthpops.data_distributions) get_usa_school_sizes_by_bracket() (in module synthpops.data_distributions) get_usa_sex_n() (in module synthpops.sampling) get_workers_by_age_to_assign() (in module synthpops.contact_networks) get_workplace_size_brackets() (in module synthpops.data_distributions) get_workplace_size_brackets_path() (in module synthpops.data_distributions) get_workplace_size_distr_by_brackets() (in module synthpops.data_distributions) get_workplace_size_distr_by_brackets_path() (in module synthpops.data_distributions)

H

household contact layer

M

make_contacts() (in module synthpops.contacts) make_contacts_from_microstructure() (in module synthpops.contacts) make_contacts_from_microstructure_objects() (in module synthpops.contacts) make_contacts_generic() (in module synthpops.contacts) make_contacts_with_facilities_from_microstructure() (in module synthpops.contacts) make_contacts_with_facilities_from_microstructure_objects() (in module synthpops.contacts) make_contacts_with_social_layers_152() (in module synthpops.contacts) make_contacts_with_social_layers_and_sex() (in module synthpops.contacts) make_contacts_without_social_layers_152() (in module synthpops.contacts) make_contacts_without_social_layers_and_sex() (in module synthpops.contacts) make_graphs() (in module synthpops.contacts) make_popdict() (in module synthpops.contacts) make_population() (in module synthpops.api) module synthpops synthpops.api synthpops.base synthpops.config synthpops.contact_networks synthpops.contact_networks_industries synthpops.contacts synthpops.data_distributions synthpops.long_term_care_facilities synthpops.plot_tools synthpops.read_write synthpops.sampling synthpops.school_modules synthpops.version

N

node	norm_age_group() (in module synthpops.base) norm_dic() (in module synthpops.base)

P

plot_contact_matrix() (in module synthpops.plot_tools)

process_usa_school_enrollment_rates() (in module synthpops.data_distributions) pt() (in module synthpops.sampling)

R

read_age_bracket_distr() (in module synthpops.data_distributions) read_gender_fraction_by_age_bracket() (in module synthpops.data_distributions) read_in_age_by_uid() (in module synthpops.read_write)

read_setting_groups() (in module synthpops.read_write) rehydrate() (in module synthpops.contacts) resample_age() (in module synthpops.sampling)

S

sample_bracket() (in module synthpops.sampling) sample_contact_age() (in module synthpops.sampling) sample_from_range() (in module synthpops.sampling) sample_n() (in module synthpops.sampling) sample_n_contact_ages() (in module synthpops.sampling) sample_n_contact_ages_with_matrix() (in module synthpops.sampling) sample_single_arr() (in module synthpops.sampling) sample_single_dict() (in module synthpops.sampling) save_synthpop() (in module synthpops.contacts) school contact layer send_students_to_school() (in module synthpops.contact_networks) send_students_to_school_with_school_types() (in module synthpops.contact_networks) set_datadir() (in module synthpops.config) set_nbrackets() (in module synthpops.config) set_seed() (in module synthpops.sampling) show_layers() (in module synthpops.contacts) synthpops module synthpops.api module synthpops.base module

synthpops.config module synthpops.contact_networks module synthpops.contact_networks_industries module synthpops.contacts module synthpops.data_distributions module synthpops.long_term_care_facilities module synthpops.plot_tools module synthpops.read_write module synthpops.sampling module synthpops.school_modules module synthpops.version module

T

time step

trim_contacts() (in module synthpops.contacts)

V

validate() (in module synthpops.config)

W

workplace contact layer write_age_by_uid_dic() (in module synthpops.read_write) write_edgelists() (in module synthpops.contacts)

write_groups_by_age_and_uid() (in module synthpops.read_write) write_school_enrollment_rates() (in module synthpops.data_distributions) write_school_size_distr_by_brackets() (in module synthpops.data_distributions)